dataset_params:
  path_to_relion_project: /path/to/relion/project/
  path_to_starfile: /path/to/starfile.star
  loads_envelope: True # (*) Default: false, loads envelope function parameters
  data_sign: "dark-on-light" # Relion convention, dark particles on a light background
  path_to_volumetric_mask: /path/to/volumetric_mask.mrc # (*) e.g., the mask from a refinement procedure

# How many images are used to compute likelihoods in parallel
# This can usually be a large value since Fourier Slice Extraction is memory efficient
n_images_in_parallel: 5000

# Maximum number of iterations for
# reweighting algorithm
max_iter: 500

# Tolerance for stopping criteria
# of the multiplicative gradient
# weight optimization method
tol: 1e-2

# A collection of structural files
# can be any combination of pdb, cif, mrc files
path_to_structural_files:
- path/to/structural_files/pdb_structural_file_0.pdb
- path/to/structural_files/cif_structural_file_1.cif
- path/to/structural_files/mrc_structural_file_2.mrc

path_to_output_dir: ./reweighting_results/

########### Atomic model exclusive parameters ###########
# These will be ignored if no structural files have
# pdb or cif format.

# atom selection string in mdtraj convention
# Examples: "all", "not element H", "name CA"
atom_selection: "all"

# Load Debye-Waller b-factors from provided PDBs
loads_b_factors: true
#########################################################